My Yamaha Fz8N 2012 is presenting the same issue on the rotor. I heard about a Yamaha warranty for this specific piece; does anyone have that document expedited by Yamaha talking about the failure and the corrective action?
You won't find any such document because admitting that the rotor was poorly designed might expose them to liability from angry customers.
The corrective action is to
1. Remove the old rotor - This includes any pieces of the old rotor that will have made its way into the oil pan. This means that you will have to drop your oil pan which requires partial disassembly of the exhaust and purchasing of 1 (or 2) oil pan gaskets to replace the old one that typically tears when the oil pan is removed. I found plastic bits and magnet shavings in my oil pan, so it is highly recommended that you take this step (even though it is time consuming).
2. Install the redesigned rotor - It is best to install the new rotor while the oil pan is off the bike because some of the parts can slip into the pan as you are trying to fit the new rotor on. When the pan off these parts just fall right onto the ground. If the pan is on then you get to drop the pan all over again. Please note: You must remove all of the oil in the bike before you drop the oil pan